Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005562.1 Corchorus olitorius cultivar O-4 contig05586, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30


Found at i:812 original size:27 final size:27

Alignment explanation


    Indices: 774--828  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        764 TTTTATAGGG

                                       
        774 AAAGTGCGATGAGGGTTTCCTATTATT
          1 AAAGTGCGATGAGGGTTTCCTATTATT

                                       
        801 AAAGTGCGATGAGGGTTTCCTATTATT
          1 AAAGTGCGATGAGGGTTTCCTATTATT

             
        828 A
          1 A

        829 TCGTCGAAGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.27, C:0.11, G:0.25, T:0.36


Consensus pattern (27 bp):   
AAAGTGCGATGAGGGTTTCCTATTATT
Done.