Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000557.1 Corchorus olitorius cultivar O-4 contig00557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:1137 original size:23 final size:21

Alignment explanation


    Indices: 1091--1138  Score: 60
    Period size: 23  Copynumber: 2.2  Consensus size: 21

       1081 AATTTCTAAC

                       *         
       1091 TTTGATCAATTGAACCCTTAA
          1 TTTGATCAATTAAACCCTTAA

                                 * 
       1112 TTTGATACAATTAAATCCCTTGA
          1 TTTGAT-CAATTAAA-CCCTTAA

                
       1135 TTTG
          1 TTTG

       1139 TTTTTCTATT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21    6  0.26
  22    7  0.30
  23   10  0.43

ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42


Consensus pattern (21 bp):   
TTTGATCAATTAAACCCTTAA
Done.