Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005575.1 Corchorus olitorius cultivar O-4 contig05599, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24


Found at i:278 original size:31 final size:31

Alignment explanation


    Indices: 237--296  Score: 111
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        227 GCTTTTGGTT

                                           
        237 TTTTCATGTTGTCAAAGAGTTGAACAATGGG
          1 TTTTCATGTTGTCAAAGAGTTGAACAATGGG

                 *                       
        268 TTTTCGTGTTGTCAAAGAGTTGAACAATG
          1 TTTTCATGTTGTCAAAGAGTTGAACAATG

        297 AAAATAGATG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37


Consensus pattern (31 bp):   
TTTTCATGTTGTCAAAGAGTTGAACAATGGG
Done.