Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005597.1 Corchorus olitorius cultivar O-4 contig05621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23


Found at i:1015 original size:19 final size:19

Alignment explanation


    Indices: 991--1028  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        981 GAATGACCAT

                               
        991 TGCTAATATTGATTCCCAG
          1 TGCTAATATTGATTCCCAG

                               
       1010 TGCTAATATTGATTCCCAG
          1 TGCTAATATTGATTCCCAG

       1029 ACCTTTCAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37


Consensus pattern (19 bp):   
TGCTAATATTGATTCCCAG
Done.