Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000560.1 Corchorus olitorius cultivar O-4 contig00560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:154 original size:23 final size:21

Alignment explanation


    Indices: 122--169  Score: 60
    Period size: 23  Copynumber: 2.2  Consensus size: 21

        112 GAATAGAAAA

                          *        
        122 CAAATCAAGGGATTTAATTGTAT
          1 CAAATCAAGGG-TTCAATTG-AT

                 *               
        145 CAAATTAAGGGTTCAATTGAT
          1 CAAATCAAGGGTTCAATTGAT

                
        166 CAAA
          1 CAAA

        170 GTTAGAAATT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21    6  0.26
  22    7  0.30
  23   10  0.43

ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31


Consensus pattern (21 bp):   
CAAATCAAGGGTTCAATTGAT
Done.