Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005600.1 Corchorus olitorius cultivar O-4 contig05624, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38


Found at i:77 original size:33 final size:33

Alignment explanation


    Indices: 35--131  Score: 110
    Period size: 33  Copynumber: 2.9  Consensus size: 33

         25 CCTAATTTGA

                            *                 
         35 GTGTTGTTTGTGATGACACTAAA-TCTGTTTTAG
          1 GTGTTGTTTGTGATGAAAC-AAATTCTGTTTTAG

                                             
         68 GTGTTGTTTGTGATGAAACAAATTCTGTTTT-G
          1 GTGTTGTTTGTGATGAAACAAATTCTGTTTTAG

                * **                         
        100 GATGCTAATTGTGATGAAAACAAA-TCTGTTTT
          1 G-TGTTGTTTGTGATG-AAACAAATTCTGTTTT

        132 GGTTGATCAT


Statistics
Matches: 57,  Mismatches: 4, Indels: 6
        0.85            0.06        0.09

Matches are distributed among these distances:
  32    5  0.09
  33   45  0.79
  34    7  0.12

ACGTcount: A:0.26, C:0.08, G:0.23, T:0.43


Consensus pattern (33 bp):   
GTGTTGTTTGTGATGAAACAAATTCTGTTTTAG
Done.