Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000561.1 Corchorus olitorius cultivar O-4 contig00561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31


Found at i:86 original size:22 final size:22

Alignment explanation


    Indices: 42--94  Score: 72
    Period size: 22  Copynumber: 2.4  Consensus size: 22

         32 CATAGTATCG

                *                 
         42 TTATTAAAATTTCATAGGAAGA
          1 TTATCAAAATTTCATAGGAAGA

                                   
         64 TTATCAAAATTTCATACGG-AGA
          1 TTATCAAAATTTCATA-GGAAGA

             *       
         86 TCATCAAAA
          1 TTATCAAAA

         95 ATAGTGTAAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  22   26  0.93
  23    2  0.07

ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32


Consensus pattern (22 bp):   
TTATCAAAATTTCATAGGAAGA

Found at i:730 original size:30 final size:30

Alignment explanation


    Indices: 694--753  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        684 TCCTCTTTTC

                                          
        694 ACGATGTAGTGACAACCCTATATCTCGTAT
          1 ACGATGTAGTGACAACCCTATATCTCGTAT

                                          
        724 ACGATGTAGTGACAACCCTATATCTCGTAT
          1 ACGATGTAGTGACAACCCTATATCTCGTAT

        754 CTTAATACAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30


Consensus pattern (30 bp):   
ACGATGTAGTGACAACCCTATATCTCGTAT
Done.