Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005613.1 Corchorus olitorius cultivar O-4 contig05637, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29


Found at i:672 original size:13 final size:13

Alignment explanation


    Indices: 646--679  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        636 GTGATCTGTC

                 *   *   
        646 CCTGAAATCGGTA
          1 CCTGAGATCCGTA

                         
        659 CCTGAGATCCGTA
          1 CCTGAGATCCGTA

                    
        672 CCTGAGAT
          1 CCTGAGAT

        680 AATAGGAAGT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24


Consensus pattern (13 bp):   
CCTGAGATCCGTA
Done.