Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005615.1 Corchorus olitorius cultivar O-4 contig05639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.16


Found at i:1036 original size:15 final size:14

Alignment explanation


    Indices: 1016--1045  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1006 AACCAGGACG

                           
       1016 AGGCCCGCGCCGAAC
          1 AGGCCCGCGCC-AAC

                          
       1031 AGGCCCGCGCCAAC
          1 AGGCCCGCGCCAAC

             
       1045 A
          1 A

       1046 TG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.23, C:0.47, G:0.30, T:0.00


Consensus pattern (14 bp):   
AGGCCCGCGCCAAC
Done.