Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005622.1 Corchorus olitorius cultivar O-4 contig05646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 809

Length: 1349
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:884 original size:13 final size:14

Alignment explanation


    Indices: 856--884  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        846 GGGAATGATG

                          
        856 AATAGCTTTCCTTC
          1 AATAGCTTTCCTTC

                          
        870 AATAGCTTT-CTTC
          1 AATAGCTTTCCTTC

              
        883 AA
          1 AA

        885 GAATCAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41


Consensus pattern (14 bp):   
AATAGCTTTCCTTC
Done.