Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005643.1 Corchorus olitorius cultivar O-4 contig05667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:254 original size:13 final size:13

Alignment explanation


    Indices: 236--261  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        226 AGACTAGGGA

                         
        236 AGAGAGCACCCTT
          1 AGAGAGCACCCTT

                         
        249 AGAGAGCACCCTT
          1 AGAGAGCACCCTT

        262 TATGTACCTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15


Consensus pattern (13 bp):   
AGAGAGCACCCTT
Done.