Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005669.1 Corchorus olitorius cultivar O-4 contig05693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38


Found at i:983 original size:2 final size:2

Alignment explanation


    Indices: 972--1014  Score: 79
    Period size: 2  Copynumber: 22.0  Consensus size: 2

        962 CTCTTTCTTT

                                                                          
        972 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
       1013 TA
          1 TA

       1015 ACTAACT


Statistics
Matches: 40,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   39  0.98

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.