Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000567.1 Corchorus olitorius cultivar O-4 contig00567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29


Found at i:466 original size:21 final size:21

Alignment explanation


    Indices: 423--477  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        413 GGCTTGGAAT

                *            **  
        423 GGTGATGGCACGGGCATGGCC
          1 GGTGGTGGCACGGGCATAACC

                           *     
        444 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                   *     
        465 GGTGGTGTCACGG
          1 GGTGGTGGCACGG

        478 TGAATGGGCG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.13, C:0.22, G:0.47, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.