Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000568.1 Corchorus olitorius cultivar O-4 contig00568, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1593
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34


Found at i:596 original size:50 final size:48

Alignment explanation


    Indices: 516--657  Score: 162
    Period size: 50  Copynumber: 2.9  Consensus size: 48

        506 CAAGCAATCC

                *      *                     **              
        516 TTTACTTTTCACTGCACTTTTTCTCAATTTTTACTACAAAAATTGAACT
          1 TTTAATTTTCATTGCACTTTTTCTCAATTTTTAAGAC-AAAATTGAACT

                     *                                     *  
        565 TTT-ATTTTTACTTGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCT
          1 TTTAATTTTCA-TTGCA-CTTTTTCTCAATTTTTAAGACAAAATTGAACT

                        *         *          *           
        614 TTTAATTTTCATCGCACTTTTTATCAATTTTT-TGACAAAATTGA
          1 TTTAATTTTCATTGCACTTTTTCTCAATTTTTAAGACAAAATTGA

        658 TTGGCACACT


Statistics
Matches: 80,  Mismatches: 10, Indels: 8
        0.82            0.10        0.08

Matches are distributed among these distances:
  47   11  0.14
  48   20  0.25
  49   24  0.30
  50   25  0.31

ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50


Consensus pattern (48 bp):   
TTTAATTTTCATTGCACTTTTTCTCAATTTTTAAGACAAAATTGAACT

Done.