Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005702.1 Corchorus olitorius cultivar O-4 contig05726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35


Found at i:671 original size:21 final size:21

Alignment explanation


    Indices: 647--689  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        637 AATTAACAAT

                                 
        647 TAAGTAGAGTCTTAAGGCAAA
          1 TAAGTAGAGTCTTAAGGCAAA

                                 
        668 TAAGTAGAGTCTTAAGGCAAA
          1 TAAGTAGAGTCTTAAGGCAAA

             
        689 T
          1 T

        690 TCTTTTCTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26


Consensus pattern (21 bp):   
TAAGTAGAGTCTTAAGGCAAA
Done.