Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005703.1 Corchorus olitorius cultivar O-4 contig05727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19


Found at i:563 original size:24 final size:23

Alignment explanation


    Indices: 530--575  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 23

        520 CCGGCTCGTC

                                    
        530 CGCCCCGCCGCTTTCGC-CGGCCA
          1 CGCCCCGCCGC-TTCGCGCGGCCA

                                   
        553 CGCCCGCGCCGCTTCGCGCGGCC
          1 CGCCC-CGCCGCTTCGCGCGGCC

        576 GCAATGGAAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23   10  0.48
  24   11  0.52

ACGTcount: A:0.02, C:0.57, G:0.30, T:0.11


Consensus pattern (23 bp):   
CGCCCCGCCGCTTCGCGCGGCCA
Done.