Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005712.1 Corchorus olitorius cultivar O-4 contig05736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1233
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:421 original size:22 final size:21

Alignment explanation


    Indices: 367--431  Score: 121
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        357 GGAACCATGG

                                 
        367 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
        388 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                  
        409 CATATAATGTTTGGAATAGATT
          1 CATAT-ATGTTTGGAATAGATT

             
        431 C
          1 C

        432 CGTTTTGAGA


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  21   26  0.60
  22   17  0.40

ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42


Consensus pattern (21 bp):   
CATATATGTTTGGAATAGATT
Done.