Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005713.1 Corchorus olitorius cultivar O-4 contig05737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32


Found at i:1203 original size:22 final size:22

Alignment explanation


    Indices: 1178--1223  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1168 ATTGGTCCTT

                                  
       1178 TTAAGTATAAGTATTTATTTTG
          1 TTAAGTATAAGTATTTATTTTG

                                  
       1200 TTAAGTATAAGTATTTATTTTG
          1 TTAAGTATAAGTATTTATTTTG

              
       1222 TT
          1 TT

       1224 GTGGTCATTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57


Consensus pattern (22 bp):   
TTAAGTATAAGTATTTATTTTG
Done.