Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000572.1 Corchorus olitorius cultivar O-4 contig00572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27


Found at i:472 original size:16 final size:15

Alignment explanation


    Indices: 433--489  Score: 62
    Period size: 15  Copynumber: 3.6  Consensus size: 15

        423 TCCGAACCGT

                          *  
        433 ATGACCCGAAACCGAAA
          1 ATGACCCG-AACC-CAA

                            
        450 ATGACCC-AACCCAGA
          1 ATGACCCGAACCCA-A

                            
        465 ATTGACCCGAACCCAA
          1 A-TGACCCGAACCCAA

                     
        481 ATGACCCGA
          1 ATGACCCGA

        490 CATTTGAACG


Statistics
Matches: 36,  Mismatches: 1, Indels: 8
        0.80            0.02        0.18

Matches are distributed among these distances:
  14    1  0.03
  15   14  0.39
  16    8  0.22
  17   13  0.36

ACGTcount: A:0.40, C:0.35, G:0.16, T:0.09


Consensus pattern (15 bp):   
ATGACCCGAACCCAA
Done.