Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005729.1 Corchorus olitorius cultivar O-4 contig05753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1248
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.19


Found at i:1167 original size:25 final size:24

Alignment explanation


    Indices: 1120--1167  Score: 60
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       1110 GTGGACATCG

                        *     *     
       1120 TGGCCCGCACGCTGGGCATTCCGC
          1 TGGCCCGCACGCGGGGCAGTCCGC

                      *             
       1144 TGGCCCGGCATGCGGGGCAGTCCG
          1 TGGCCC-GCACGCGGGGCAGTCCG

       1168 TGATCGTGGA


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  24    6  0.30
  25   14  0.70

ACGTcount: A:0.08, C:0.38, G:0.40, T:0.15


Consensus pattern (24 bp):   
TGGCCCGCACGCGGGGCAGTCCGC
Done.