Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000573.1 Corchorus olitorius cultivar O-4 contig00573, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1141
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:533 original size:29 final size:27

Alignment explanation


    Indices: 444--524  Score: 92
    Period size: 29  Copynumber: 2.9  Consensus size: 27

        434 CTGAACATAC

                                  *     
        444 AAATGACCAAAATGCCCC-TAGGTGTAT
          1 AAATGACCAAAATGCCCCTTAGTTGT-T

                               * *  *  
        471 AAATGACCAAAATGCCCCTGAATTTTT
          1 AAATGACCAAAATGCCCCTTAGTTGTT

                                       
        498 GAAAATGACCAAAATGCCCCTTAGTTG
          1 --AAATGACCAAAATGCCCCTTAGTTG

        525 ATTCTAATGC


Statistics
Matches: 44,  Mismatches: 7, Indels: 4
        0.80            0.13        0.07

Matches are distributed among these distances:
  27   19  0.43
  28    3  0.07
  29   22  0.50

ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25


Consensus pattern (27 bp):   
AAATGACCAAAATGCCCCTTAGTTGTT
Done.