Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005733.1 Corchorus olitorius cultivar O-4 contig05757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1105
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16


Found at i:1044 original size:15 final size:15

Alignment explanation


    Indices: 1021--1056  Score: 63
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1011 GCCGCCCGCA

                *          
       1021 TCATTGCCACCCATG
          1 TCATGGCCACCCATG

                           
       1036 TCATGGCCACCCATG
          1 TCATGGCCACCCATG

                  
       1051 TCATGG
          1 TCATGG

       1057 ATTGAAAACG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.19, C:0.36, G:0.19, T:0.25


Consensus pattern (15 bp):   
TCATGGCCACCCATG
Done.