Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005736.1 Corchorus olitorius cultivar O-4 contig05760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:992 original size:29 final size:29

Alignment explanation


    Indices: 950--1007  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        940 TTGGAAGGAG

                                         
        950 ACGGAAGATTCTCAACTAGATCTGCTTAC
          1 ACGGAAGATTCTCAACTAGATCTGCTTAC

                                         
        979 ACGGAAGATTCTCAACTAGATCTGCTTAC
          1 ACGGAAGATTCTCAACTAGATCTGCTTAC

       1008 CTTGTTCAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28


Consensus pattern (29 bp):   
ACGGAAGATTCTCAACTAGATCTGCTTAC
Done.