Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005748.1 Corchorus olitorius cultivar O-4 contig05772, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.17, C:0.36, G:0.32, T:0.15


Found at i:364 original size:16 final size:18

Alignment explanation


    Indices: 332--366  Score: 56
    Period size: 16  Copynumber: 2.1  Consensus size: 18

        322 CGGCCTGGGT

                              
        332 CTCAAGGGCGACTGGAAG
          1 CTCAAGGGCGACTGGAAG

                              
        350 CTCAA-GGCG-CTGGAAG
          1 CTCAAGGGCGACTGGAAG

             
        366 C
          1 C

        367 CCTGGAGGCG


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    8  0.47
  17    4  0.24
  18    5  0.29

ACGTcount: A:0.26, C:0.26, G:0.37, T:0.11


Consensus pattern (18 bp):   
CTCAAGGGCGACTGGAAG
Done.