Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005765.1 Corchorus olitorius cultivar O-4 contig05789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31


Found at i:393 original size:18 final size:18

Alignment explanation


    Indices: 370--405  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        360 TTTGCCTAGA

                              
        370 GTATGCTTTGAATTTGAT
          1 GTATGCTTTGAATTTGAT

                              
        388 GTATGCTTTGAATTTGAT
          1 GTATGCTTTGAATTTGAT

        406 TCTGATATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.06, G:0.22, T:0.50


Consensus pattern (18 bp):   
GTATGCTTTGAATTTGAT

Found at i:579 original size:27 final size:27

Alignment explanation


    Indices: 541--594  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        531 AGAAGGCAGC

                                       
        541 AGACTAGTTTGCTACTCAGTCTAGAAT
          1 AGACTAGTTTGCTACTCAGTCTAGAAT

                                       
        568 AGACTAGTTTGCTACTCAGTCTAGAAT
          1 AGACTAGTTTGCTACTCAGTCTAGAAT

        595 GGGGAAGAGC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Consensus pattern (27 bp):   
AGACTAGTTTGCTACTCAGTCTAGAAT
Done.