Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005782.1 Corchorus olitorius cultivar O-4 contig05806, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27


Found at i:812 original size:7 final size:7

Alignment explanation


    Indices: 800--857  Score: 116
    Period size: 7  Copynumber: 8.3  Consensus size: 7

        790 CAGACTTGCA

                   
        800 AAGAAGT
          1 AAGAAGT

                   
        807 AAGAAGT
          1 AAGAAGT

                   
        814 AAGAAGT
          1 AAGAAGT

                   
        821 AAGAAGT
          1 AAGAAGT

                   
        828 AAGAAGT
          1 AAGAAGT

                   
        835 AAGAAGT
          1 AAGAAGT

                   
        842 AAGAAGT
          1 AAGAAGT

                   
        849 AAGAAGT
          1 AAGAAGT

              
        856 AA
          1 AA

        858 TGTAATCATG


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   51  1.00

ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14


Consensus pattern (7 bp):   
AAGAAGT

Done.