Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005785.1 Corchorus olitorius cultivar O-4 contig05809, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29


Found at i:390 original size:22 final size:22

Alignment explanation


    Indices: 365--409  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        355 ATTGGTCCTT

                                  
        365 TTAAGTATAAGTATTTATTTTG
          1 TTAAGTATAAGTATTTATTTTG

                                  
        387 TTAAGTATAAGTATTTATTTTG
          1 TTAAGTATAAGTATTTATTTTG

             
        409 T
          1 T

        410 CGTGGTCATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56


Consensus pattern (22 bp):   
TTAAGTATAAGTATTTATTTTG
Done.