Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005786.1 Corchorus olitorius cultivar O-4 contig05810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29


Found at i:283 original size:36 final size:36

Alignment explanation


    Indices: 240--308  Score: 138
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        230 AAGTAAAAAG

                                                
        240 AAAGAATCACAAATTTCTAATAATACAGAAAACAAA
          1 AAAGAATCACAAATTTCTAATAATACAGAAAACAAA

                                             
        276 AAAGAATCACAAATTTCTAATAATACAGAAAAC
          1 AAAGAATCACAAATTTCTAATAATACAGAAAAC

        309 GATAGAGACG


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   33  1.00

ACGTcount: A:0.59, C:0.14, G:0.06, T:0.20


Consensus pattern (36 bp):   
AAAGAATCACAAATTTCTAATAATACAGAAAACAAA
Done.