Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005795.1 Corchorus olitorius cultivar O-4 contig05819, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.34


Found at i:58 original size:12 final size:12

Alignment explanation


    Indices: 41--66  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         31 TAAGATTCTT

                        
         41 AATTTAATAAGG
          1 AATTTAATAAGG

                        
         53 AATTTAATAAGG
          1 AATTTAATAAGG

              
         65 AA
          1 AA

         67 GCCAGGAAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31


Consensus pattern (12 bp):   
AATTTAATAAGG

Found at i:1003 original size:15 final size:16

Alignment explanation


    Indices: 979--1012  Score: 61
    Period size: 15  Copynumber: 2.2  Consensus size: 16

        969 AGAAATTATA

                            
        979 TTATATATATTTCTAT
          1 TTATATATATTTCTAT

                            
        995 TTATA-ATATTTCTAT
          1 TTATATATATTTCTAT

               
       1010 TTA
          1 TTA

       1013 GAAATTATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  15   13  0.72
  16    5  0.28

ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62


Consensus pattern (16 bp):   
TTATATATATTTCTAT
Done.