Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005801.1 Corchorus olitorius cultivar O-4 contig05825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.16, C:0.39, G:0.30, T:0.15


Found at i:784 original size:15 final size:16

Alignment explanation


    Indices: 758--788  Score: 55
    Period size: 15  Copynumber: 2.0  Consensus size: 16

        748 CCGCCAAAGC

                            
        758 GCGGCGACGGCGGCGG
          1 GCGGCGACGGCGGCGG

                            
        774 GCGGC-ACGGCGGCGG
          1 GCGGCGACGGCGGCGG

        789 CATCGCGATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   10  0.67
  16    5  0.33

ACGTcount: A:0.06, C:0.32, G:0.61, T:0.00


Consensus pattern (16 bp):   
GCGGCGACGGCGGCGG

Found at i:952 original size:12 final size:13

Alignment explanation


    Indices: 924--953  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

        914 ATGTAGCCGC

                         
        924 GCAAAAATTCCGA
          1 GCAAAAATTCCGA

                         
        937 GCAAAAATTCCG-
          1 GCAAAAATTCCGA

                 
        949 GCAAA
          1 GCAAA

        954 CGAGCAATAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    5  0.29
  13   12  0.71

ACGTcount: A:0.47, C:0.23, G:0.17, T:0.13


Consensus pattern (13 bp):   
GCAAAAATTCCGA
Done.