Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005813.1 Corchorus olitorius cultivar O-4 contig05837, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:148 original size:27 final size:27

Alignment explanation


    Indices: 110--164  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        100 AGAGTATCCG

                                       
        110 GCGAATCAGATCCCTAGAATACTCCTA
          1 GCGAATCAGATCCCTAGAATACTCCTA

                                       
        137 GCGAATCAGATCCCTAGAATACTCCTA
          1 GCGAATCAGATCCCTAGAATACTCCTA

             
        164 G
          1 G

        165 AGGTCTCAGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22


Consensus pattern (27 bp):   
GCGAATCAGATCCCTAGAATACTCCTA
Done.