Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005820.1 Corchorus olitorius cultivar O-4 contig05845, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:942 original size:13 final size:13

Alignment explanation


    Indices: 909--943  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        899 GAGGATGTCT

                         
        909 TATATATATTAAA
          1 TATATATATTAAA

            *  *         
        922 GATTTATATTAAA
          1 TATATATATTAAA

                     
        935 TATATATAT
          1 TATATATAT

        944 AGATTATNTT


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (13 bp):   
TATATATATTAAA
Done.