Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005826.1 Corchorus olitorius cultivar O-4 contig05851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33


Found at i:876 original size:21 final size:21

Alignment explanation


    Indices: 852--894  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        842 AAAGAAAAGA

                                 
        852 ATTTGCCTTAAGACTCTACTT
          1 ATTTGCCTTAAGACTCTACTT

                                 
        873 ATTTGCCTTAAGACTCTACTT
          1 ATTTGCCTTAAGACTCTACTT

             
        894 A
          1 A

        895 ATTGTTAATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42


Consensus pattern (21 bp):   
ATTTGCCTTAAGACTCTACTT
Done.