Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000583.1 Corchorus olitorius cultivar O-4 contig00583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:555 original size:16 final size:16

Alignment explanation


    Indices: 534--567  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        524 AACACTTAAA

                             
        534 TTTCTAT-TTTTAATTT
          1 TTTCTATCTTTT-ATTT

                            
        550 TTTCTATCTTTTATTT
          1 TTTCTATCTTTTATTT

              
        566 TT
          1 TT

        568 ATTTCGTTTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16   13  0.76
  17    4  0.24

ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76


Consensus pattern (16 bp):   
TTTCTATCTTTTATTT
Done.