Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005834.1 Corchorus olitorius cultivar O-4 contig05859, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1010
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:397 original size:21 final size:21

Alignment explanation


    Indices: 371--434  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        361 TCTCAAAACG

                                 
        371 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        392 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        413 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

             
        434 G
          1 G

        435 CCATGGTTCC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33


Consensus pattern (21 bp):   
GAATCTATTCCAAACATATAT
Done.