Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005837.1 Corchorus olitorius cultivar O-4 contig05862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32


Found at i:35 original size:23 final size:23

Alignment explanation


    Indices: 5--51  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

          1 AAGA

                                   
          5 ACTGAGTCGTTTTCTTCTTGACT
          1 ACTGAGTCGTTTTCTTCTTGACT

                                   
         28 ACTGAGTCGTTTTCTTCTTGACT
          1 ACTGAGTCGTTTTCTTCTTGACT

             
         51 A
          1 A

         52 TGGTTTTGTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47


Consensus pattern (23 bp):   
ACTGAGTCGTTTTCTTCTTGACT
Done.