Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005840.1 Corchorus olitorius cultivar O-4 contig05865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:857 original size:21 final size:21

Alignment explanation


    Indices: 831--874  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        821 GTCCGAACCT

                                 
        831 TATGAGTAGCTATACTCTGAA
          1 TATGAGTAGCTATACTCTGAA

                                 
        852 TATGAGTAGCTATACTCTGAA
          1 TATGAGTAGCTATACTCTGAA

              
        873 TA
          1 TA

        875 GGCCTTCCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34


Consensus pattern (21 bp):   
TATGAGTAGCTATACTCTGAA
Done.