Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005851.1 Corchorus olitorius cultivar O-4 contig05876, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40


Found at i:259 original size:18 final size:18

Alignment explanation


    Indices: 238--290  Score: 106
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        228 ATACTTTTAC

                              
        238 TCCTCTTGGTACCGATAT
          1 TCCTCTTGGTACCGATAT

                              
        256 TCCTCTTGGTACCGATAT
          1 TCCTCTTGGTACCGATAT

                             
        274 TCCTCTTGGTACCGATA
          1 TCCTCTTGGTACCGATA

        291 GCGACCCAGG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   35  1.00

ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38


Consensus pattern (18 bp):   
TCCTCTTGGTACCGATAT
Done.