Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000586.1 Corchorus olitorius cultivar O-4 contig00586, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41


Found at i:152 original size:30 final size:30

Alignment explanation


    Indices: 117--178  Score: 90
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        107 TATAATTTTT

                      *  *                 
        117 AATCATTAAACTTTTATTT-ATTAATTATAA
          1 AATCATTAAAATTCTATTTCA-TAATTATAA

                                          
        147 AATCATTAAAATTCTATTTCATAATTATAA
          1 AATCATTAAAATTCTATTTCATAATTATAA

              
        177 AA
          1 AA

        179 AGATATTGAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  30   28  0.97
  31    1  0.03

ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45


Consensus pattern (30 bp):   
AATCATTAAAATTCTATTTCATAATTATAA

Found at i:589 original size:3 final size:3

Alignment explanation


    Indices: 583--620  Score: 76
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        573 TAACTTTATT

                                                              
        583 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT

        621 TTTAATCATG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATA

Done.