Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005865.1 Corchorus olitorius cultivar O-4 contig05890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29


Found at i:632 original size:12 final size:12

Alignment explanation


    Indices: 615--640  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        605 TTTTCCTGGC

                        
        615 TTCCTTATTAAA
          1 TTCCTTATTAAA

                        
        627 TTCCTTATTAAA
          1 TTCCTTATTAAA

              
        639 TT
          1 TT

        641 AAGAATCTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54


Consensus pattern (12 bp):   
TTCCTTATTAAA

Found at i:794 original size:13 final size:13

Alignment explanation


    Indices: 776--802  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        766 GTCACCGGAT

                         
        776 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
        789 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
        802 T
          1 T

        803 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.