Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005869.1 Corchorus olitorius cultivar O-4 contig05894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.47


Found at i:519 original size:16 final size:16

Alignment explanation


    Indices: 470--520  Score: 50
    Period size: 16  Copynumber: 3.1  Consensus size: 16

        460 TTTTAATAAC

                        *    
        470 TTTTTAGCTTCTTCTTT
          1 TTTTTA-CTTCTACTTT

                   *          
        487 TCTTTCTGCTT-TACTTT
          1 T-TTT-TACTTCTACTTT

                            
        504 TTTTTACTTCTACTTT
          1 TTTTTACTTCTACTTT

             
        520 T
          1 T

        521 ATATCCGTCC


Statistics
Matches: 28,  Mismatches: 3, Indels: 7
        0.74            0.08        0.18

Matches are distributed among these distances:
  15    4  0.14
  16   10  0.36
  17    7  0.25
  18    6  0.21
  19    1  0.04

ACGTcount: A:0.08, C:0.20, G:0.04, T:0.69


Consensus pattern (16 bp):   
TTTTTACTTCTACTTT
Done.