Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005871.1 Corchorus olitorius cultivar O-4 contig05896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29


Found at i:328 original size:25 final size:25

Alignment explanation


    Indices: 294--343  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        284 GATAGATCTA

                                     
        294 GATAATGGCTACTATTGTGTGCGAT
          1 GATAATGGCTACTATTGTGTGCGAT

                                     
        319 GATAATGGCTACTATTGTGTGCGAT
          1 GATAATGGCTACTATTGTGTGCGAT

        344 TTAGCTCTCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36


Consensus pattern (25 bp):   
GATAATGGCTACTATTGTGTGCGAT
Done.