Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005877.1 Corchorus olitorius cultivar O-4 contig05902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29


Found at i:195 original size:22 final size:22

Alignment explanation


    Indices: 167--255  Score: 178
    Period size: 22  Copynumber: 4.0  Consensus size: 22

        157 AAAAATAAGG

                                  
        167 ATAAGTACACCTTTATCTTGCA
          1 ATAAGTACACCTTTATCTTGCA

                                  
        189 ATAAGTACACCTTTATCTTGCA
          1 ATAAGTACACCTTTATCTTGCA

                                  
        211 ATAAGTACACCTTTATCTTGCA
          1 ATAAGTACACCTTTATCTTGCA

                                  
        233 ATAAGTACACCTTTATCTTGCA
          1 ATAAGTACACCTTTATCTTGCA

             
        255 A
          1 A

        256 AGTGACACTT


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   67  1.00

ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36


Consensus pattern (22 bp):   
ATAAGTACACCTTTATCTTGCA

Done.