Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000589.1 Corchorus olitorius cultivar O-4 contig00589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:491 original size:2 final size:2

Alignment explanation


    Indices: 484--522  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        474 CATTCATGTC

                                    *                                 
        484 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        523 GTGCTGCCTA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.