Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000590.1 Corchorus olitorius cultivar O-4 contig00590, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32


Found at i:99 original size:16 final size:15

Alignment explanation


    Indices: 73--104  Score: 55
    Period size: 16  Copynumber: 2.1  Consensus size: 15

         63 ATCCATTAAA

                           
         73 ATCTCTAGTACCAGT
          1 ATCTCTAGTACCAGT

                            
         88 ATCTCGTAGTACCAGT
          1 ATCTC-TAGTACCAGT

             
        104 A
          1 A

        105 AAGCCTTGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    5  0.31
  16   11  0.69

ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31


Consensus pattern (15 bp):   
ATCTCTAGTACCAGT
Done.