Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005907.1 Corchorus olitorius cultivar O-4 contig05932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 734

Length: 1224
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30


Found at i:79 original size:36 final size:37

Alignment explanation


    Indices: 23--96  Score: 123
    Period size: 36  Copynumber: 2.0  Consensus size: 37

         13 GAATGCTTTG

                                       *         
         23 AAAACTGAATGGGAACTTTCCCAATTTGAAAACTTAA
          1 AAAACTGAATGGGAACTTTCCCAATTTAAAAACTTAA

                    *                            
         60 AAAACTG-GTGGGAACTTTCCCAATTTAAAAACTTAA
          1 AAAACTGAATGGGAACTTTCCCAATTTAAAAACTTAA

             
         96 A
          1 A

         97 CCTGATGAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  36   28  0.80
  37    7  0.20

ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27


Consensus pattern (37 bp):   
AAAACTGAATGGGAACTTTCCCAATTTAAAAACTTAA
Done.