Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005920.1 Corchorus olitorius cultivar O-4 contig05945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31


Found at i:599 original size:16 final size:17

Alignment explanation


    Indices: 570--607  Score: 60
    Period size: 16  Copynumber: 2.2  Consensus size: 17

        560 TTTTATCGTC

                              
        570 TCTCTTTGTCTCTGTCTG
          1 TCTCTTTG-CTCTGTCTG

                             
        588 TCTCTTTG-TCTGTCTG
          1 TCTCTTTGCTCTGTCTG

                
        604 TCTC
          1 TCTC

        608 CAGTCTAGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  16   12  0.60
  18    8  0.40

ACGTcount: A:0.00, C:0.29, G:0.16, T:0.55


Consensus pattern (17 bp):   
TCTCTTTGCTCTGTCTG
Done.