Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005937.1 Corchorus olitorius cultivar O-4 contig05962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31


Found at i:487 original size:15 final size:14

Alignment explanation


    Indices: 459--490  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        449 AAAAATCAAG

                          
        459 ATAAAAAAAGAATA
          1 ATAAAAAAAGAATA

                          
        473 AT-AAAAAAG-ATA
          1 ATAAAAAAAGAATA

                  
        485 ATAAAA
          1 ATAAAA

        491 GTGCTTTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    5  0.29
  13   10  0.59
  14    2  0.12

ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16


Consensus pattern (14 bp):   
ATAAAAAAAGAATA
Done.