Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005942.1 Corchorus olitorius cultivar O-4 contig05967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1826
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36


Found at i:953 original size:17 final size:17

Alignment explanation


    Indices: 931--964  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        921 TCAAATTATT

                      *      
        931 TCGGGTTCGGTCTCGGG
          1 TCGGGTTCGGGCTCGGG

                   *         
        948 TCGGGTTTGGGCTCGGG
          1 TCGGGTTCGGGCTCGGG

        965 CTGCCTCGGG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.00, C:0.21, G:0.50, T:0.29


Consensus pattern (17 bp):   
TCGGGTTCGGGCTCGGG
Done.