Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005948.1 Corchorus olitorius cultivar O-4 contig05973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1223
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40


Found at i:434 original size:27 final size:30

Alignment explanation


    Indices: 362--434  Score: 73
    Period size: 27  Copynumber: 2.5  Consensus size: 30

        352 TTAATGCCCT

                                      *    
        362 TTTTGCCCCCTGAACTTGTACGATTTTGACG
          1 TTTTGCCCCCTGAACTTGTAC-ATTTGGACG

                     * *                * 
        393 TTTTG-CCCATAAACTT-TA-ATTTGGATG
          1 TTTTGCCCCCTGAACTTGTACATTTGGACG

                            
        420 -TTTGCCCCCTGAACT
          1 TTTTGCCCCCTGAACT

        435 CGCAATTTTG


Statistics
Matches: 35,  Mismatches: 6, Indels: 6
        0.74            0.13        0.13

Matches are distributed among these distances:
  26    4  0.11
  27   15  0.43
  29    2  0.06
  30    9  0.26
  31    5  0.14

ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40


Consensus pattern (30 bp):   
TTTTGCCCCCTGAACTTGTACATTTGGACG
Done.